Activeperl 5.8 8
#ACTIVEPERL 5.8 8 ZIP FILE#
We first need to download and save the PennCNV package as zip file from a web browser to local hard drive, and use a unzipping software to unzip the files. In this section we describe the method for running PennCNV under Cygwin. You can access the webpage describing this procedure in the PennCNV Plug-in page. If you really like to use Windows, and if you do not want to use command line, you can alternatively try to use PennCNV inside BeadStudio software by the Universal CNV adapter. These two methods are described in the following two sections.
#ACTIVEPERL 5.8 8 INSTALL#
There are two ways to use PennCNV in a Windows system: either install Cygwin and use PennCNV under Cygwin shell, or install ActivePerl and use PennCNV in a regular Windows command shell. So, in the install I had to do "perlbrew install perl-thread -multi". See more instructions at the end of this page.
![activeperl 5.8 8 activeperl 5.8 8](https://img.wonderhowto.com/img/18/61/63475352765106/0/install-activeperl-5-5-8.1280x600.jpg)
#ACTIVEPERL 5.8 8 CODE#
In order to use (for example), as precompiled code for perl-5.8.8 (x86_64-linux-thread-multi, one would have to set their perlbrew install to install a version where thread and multi is available. Perlbrew defaults the installation to non-threaded and non-multi perl versions. To solve this issue, you can use perlbrew to install a lower version of Perl and run PennCNV on top of that without re-compilation. If your computer is not a standard PC with a standard installation of Perl/Linux, to ensure that PennCNV runs correctly in your system, always try to re-compile the source code! See the more detailed instruction below.įor Solaris, change " gcc" to " cc" in the Makefile, since normally one can create shared libraries with c compiler provided byĪDDITIONAL NOTES: If you have problem installing PennCNV in your operating system, it is perhaps due to incompatibility with the latest version of Perl 5.14/5.18 in some systems. If other types of error message are issued (such as floating point exception), we need to compile the program, see the “compilation” section below. If an error message like “ /usr/bin/perl: bad interpreter: No such file or directory” is shown, it indicates that Perl is installed in a different directory: try running “ perl. It will show the program usage information, indicating the successful installation of the program.
![activeperl 5.8 8 activeperl 5.8 8](https://content.instructables.com/ORIG/F5E/MPZQ/FGHSWNG4/F5EMPZQFGHSWNG4.jpg)
![activeperl 5.8 8 activeperl 5.8 8](https://image01.seesaawiki.jp/e/u/eqemu/a6c84904b47e6f9d.jpg)
If using Linux/Unix system, we can run the wget command to download the program files in a local penncnv ENS40]$. Installation on various operating systems In fact, many of the problems that users reported can be simply solved by re-compilation of the source code!ġ Installation on various operating systemsġ.2 Installation under Windows - overviewĢ.3 Problem (wave adjustment does not work):Ģ.4 Problem (“core dumped” or “cannot locate loadable object” error):Ģ.6 Problem (PennCNV does not compile on Ubuntu): Although pre-compiled executables are included in the software package, they may not match the specific system architecture that users may have therefore, re-compilation of the source code is always recommended. Below is the instruction for installing PennCNV on various operating systems.